{"id":832,"date":"2026-06-11T23:50:37","date_gmt":"2026-06-11T15:50:37","guid":{"rendered":"https:\/\/npi-disruptors.com\/index.php\/proteins\/q9uxc2\/"},"modified":"2026-07-22T23:50:26","modified_gmt":"2026-07-22T15:50:26","slug":"q9uxc2","status":"publish","type":"proteins","link":"https:\/\/npi-disruptors.com\/index.php\/proteins\/q9uxc2\/","title":{"rendered":"Q9UXC2"},"content":{"rendered":"","protected":false},"featured_media":0,"template":"","class_list":["post-832","proteins","type-proteins","status-publish","hentry"],"acf":{"uniprot_id":"Q9UXC2","uniprot_related_pdbs":"2c37","protein_pocket_json":"[{\"pdb_id\":\"2c37\",\"pockets\":[{\"compound_name\":\"U5P\",\"ligand_instance\":\"F:U5P302\",\"pocket_id\":\"2c37_F:U5P302\",\"cutoff_A\":4.0,\"na_match_pdb_ids\":[],\"na_contributing_pdb_ids\":[\"2jea\",\"4ba2\"],\"reference_pdb_id\":\"2jea\",\"reference_na_type\":\"RNA-bound\",\"reference_na_description\":\"RNA\",\"source_pocket_residue_count\":7,\"source_pocket_residue_set\":\"F:ALA134;F:ALA136;F:ARG99;F:ASP182;F:GLU179;F:SER138;F:THR88\",\"source_hydrophobic_ratio\":0.2857,\"source_positive_ratio\":0.1429,\"mapped_uniprot_position_count\":7,\"reference_pocket_residue_count\":7,\"reference_pocket_residue_set\":\"B:ALA134;B:ALA136;B:ALA182;B:ARG99;B:GLU179;B:SER138;B:THR88\",\"reference_hydrophobic_ratio\":0.4286,\"reference_positive_ratio\":0.1429,\"source_alignment_chain\":\"F\",\"reference_alignment_chain\":\"B\",\"global_rmsd_A\":1.9565,\"global_ca_count\":234,\"pocket_rmsd_A\":0.3276,\"pocket_ca_count\":7,\"sequence_identity\":0.9957,\"overlay_cif_file\":\"2c37__2jea__src-F__ref-B__U5P__F_U5P302__2c37_F_U5P302__overlay.cif\",\"overlay_cif_url\":\"https:\/\/npi-disruptors-structures.s3.us-east-2.amazonaws.com\/aligned_reference_cif\/2c37__2jea__src-F__ref-B__U5P__F_U5P302__2c37_F_U5P302__overlay.cif\"},{\"compound_name\":\"U5P\",\"ligand_instance\":\"F:U5P302\",\"pocket_id\":\"2c37_F:U5P302\",\"cutoff_A\":4.0,\"na_match_pdb_ids\":[],\"na_contributing_pdb_ids\":[\"2jea\",\"4ba2\"],\"reference_pdb_id\":\"4ba2\",\"reference_na_type\":\"RNA-bound\",\"reference_na_description\":\"5'-R(*AP*AP*AP*AP)-3'\",\"source_pocket_residue_count\":7,\"source_pocket_residue_set\":\"F:ALA134;F:ALA136;F:ARG99;F:ASP182;F:GLU179;F:SER138;F:THR88\",\"source_hydrophobic_ratio\":0.2857,\"source_positive_ratio\":0.1429,\"mapped_uniprot_position_count\":7,\"reference_pocket_residue_count\":7,\"reference_pocket_residue_set\":\"B:ALA134;B:ALA136;B:ALA182;B:ARG99;B:GLU179;B:SER138;B:THR88\",\"reference_hydrophobic_ratio\":0.4286,\"reference_positive_ratio\":0.1429,\"source_alignment_chain\":\"F\",\"reference_alignment_chain\":\"B\",\"global_rmsd_A\":1.9688,\"global_ca_count\":234,\"pocket_rmsd_A\":0.2402,\"pocket_ca_count\":7,\"sequence_identity\":0.9957,\"overlay_cif_file\":\"2c37__4ba2__src-F__ref-B__U5P__F_U5P302__2c37_F_U5P302__overlay.cif\",\"overlay_cif_url\":\"https:\/\/npi-disruptors-structures.s3.us-east-2.amazonaws.com\/aligned_reference_cif\/2c37__4ba2__src-F__ref-B__U5P__F_U5P302__2c37_F_U5P302__overlay.cif\"}]}]","protein_name":"Exosome complex component Rrp41","protein_synonyms":"","gene_name":"rrp41","gene_synonyms":"SSO0735","organism_name":"Saccharolobus solfataricus (strain ATCC 35092 \/ DSM 1617 \/ JCM 11322 \/ P2)","uniprot_reviewed":"Reviewed","interpro_family":"IPR011807: Exosome complex component Rrp41; IPR050080: Ribonuclease PH","interpro_domains":"IPR001247: Exoribonuclease, phosphorolytic domain 1; IPR015847: Exoribonuclease, phosphorolytic domain 2","interpro_homologous_superfamily":"IPR020568: Ribosomal protein uS5 domain 2-type superfamily; IPR027408: PNPase\/RNase PH domain superfamily; IPR036345: Exoribonuclease, PH domain 2 superfamily","pfam_domains":"","interpro_other_entries":"","broad_protein_class":"Nuclease \/ DNA-RNA repair enzyme","gpt_checked_class":"RNA-binding \/ RNA metabolism protein","broad_class_reason":"matched keywords: nuclease, ribonuclease, ribonuclease ph, rnase, rrp41","all_matched_classes":"Nuclease \/ DNA-RNA repair enzyme [nuclease, ribonuclease, ribonuclease ph, rnase, rrp41] || Translation \/ ribosomal protein [ribosomal]"},"_links":{"self":[{"href":"https:\/\/npi-disruptors.com\/index.php\/wp-json\/wp\/v2\/proteins\/832","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/npi-disruptors.com\/index.php\/wp-json\/wp\/v2\/proteins"}],"about":[{"href":"https:\/\/npi-disruptors.com\/index.php\/wp-json\/wp\/v2\/types\/proteins"}],"wp:attachment":[{"href":"https:\/\/npi-disruptors.com\/index.php\/wp-json\/wp\/v2\/media?parent=832"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}