Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

11 proteins
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Showing 11 of 11 matching proteins
Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus aquaticus
UniProt ID
P19821
Related PDBs
5ktq
InterPro family
IPR002298: DNA polymerase A; IPR018320: DNA polymerase 1
InterPro domains
IPR001098: DNA-directed DNA polymerase, family A, palm domain; IPR002421: 5'-3' exonuclease; IPR003583: Helix-hairpin-helix DNA-binding motif, class 1; IPR015361: Taq polymerase, thermostable, exonuclease region; IPR020045: DNA polymerase I-like, H3TH domain; IPR020046: 5'-3' exonuclease, alpha-helical arch, N-terminal
Matched classes
DNA/RNA polymerase and replication protein [dna polymerase, dna-directed dna polymerase, polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, ribonuclease]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Homo sapiens
UniProt ID
O75417
Related PDBs
9osy
InterPro family
IPR002298: DNA polymerase A
InterPro domains
IPR001098: DNA-directed DNA polymerase, family A, palm domain; IPR001650: Helicase, C-terminal domain-like; IPR011545: DEAD/DEAH-box helicase domain; IPR014001: Helicase superfamily 1/2, ATP-binding domain; IPR046931: DNA polymerase theta-like, helix-turn-helix domain; IPR048960: POLQ-like, helical domain; IPR057220: Domain of unknown function DUF7898
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [cas ] || DNA/RNA polymerase and replication protein [dna polymerase, dna-directed dna polymerase, polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside] || Other enzyme / miscellaneous [duf]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia phage RB69
UniProt ID
Q38087
Related PDBs
1ih7,1waf,1waj,3cfo,4i9l,7f4y
InterPro family
IPR006172: DNA-directed DNA polymerase, family B; IPR034749: DNA-directed DNA polymerase T4 type; IPR050240: DNA polymerase type-B
InterPro domains
IPR006133: DNA-directed DNA polymerase, family B, exonuclease domain; IPR006134: DNA-directed DNA polymerase, family B, multifunctional domain
Matched classes
DNA/RNA polymerase and replication protein [dna polymerase, dna-directed dna polymerase, polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, ribonuclease]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
UniProt ID
P08518
Related PDBs
1twa,1twh,1twg,1twc,1twf
InterPro family
IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR007646: RNA polymerase Rpb2, domain 4; IPR007647: RNA polymerase Rpb2, domain 5
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8V2
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR010243: DNA-directed RNA polymerase beta subunit, bacterial-type; IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
UniProt ID
Q8RQE9
Related PDBs
1zyr,2a6h
InterPro family
IPR010243: DNA-directed RNA polymerase beta subunit, bacterial-type; IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8T7
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR012754: DNA-directed RNA polymerase, subunit beta-prime, bacterial type; IPR045867: DNA-directed RNA polymerase, subunit beta-prime
InterPro domains
IPR000722: RNA polymerase, alpha subunit; IPR006592: RNA polymerase, N-terminal; IPR007066: RNA polymerase Rpb1, domain 3; IPR007080: RNA polymerase Rpb1, domain 1; IPR007081: RNA polymerase Rpb1, domain 5; IPR007083: RNA polymerase Rpb1, domain 4
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
UniProt ID
Q8RQE8
Related PDBs
1zyr,2a6h
InterPro family
IPR012754: DNA-directed RNA polymerase, subunit beta-prime, bacterial type; IPR045867: DNA-directed RNA polymerase, subunit beta-prime
InterPro domains
IPR000722: RNA polymerase, alpha subunit; IPR006592: RNA polymerase, N-terminal; IPR007066: RNA polymerase Rpb1, domain 3; IPR007080: RNA polymerase Rpb1, domain 1; IPR007081: RNA polymerase Rpb1, domain 5; IPR007083: RNA polymerase Rpb1, domain 4; IPR048566: DNA-directed RNA polymerase subunit beta', hybrid domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
UniProt ID
P29468
Related PDBs
1fa0
InterPro family
IPR014492: Poly(A) polymerase
InterPro domains
IPR007010: Poly(A) polymerase, RNA-binding domain; IPR007012: Poly(A) polymerase, central domain; IPR048840: Poly(A) polymerase, nucleotidyltransferase domain
Matched classes
DNA/RNA polymerase and replication protein [nucleotidyltransferase, poly(a) polymerase, polymerase] || RNA-binding / RNA metabolism protein [rna-binding]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Vaccinia virus (strain Western Reserve)
UniProt ID
P23371
Related PDBs
2ga9
InterPro family
IPR004976: Poly(A) polymerase catalytic subunit, Poxvirus
InterPro domains
IPR024231: Poly(A) polymerase, nucleotidyltransferase domain, Poxvirus; IPR024397: Poxvirus poly(A) polymerase, catalytic subunit, C-terminal; IPR024398: Poxvirus poly(A) polymerase, catalytic subunit, N-terminal
Matched classes
Viral replication / viral nucleic-acid-related protein [poxvirus] || DNA/RNA polymerase and replication protein [nucleotidyltransferase, poly(a) polymerase, polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
UniProt ID
P40947
Related PDBs
5yun,7vum
InterPro family
IPR000424: Primosome PriB/single-strand DNA-binding; IPR011344: Single-stranded DNA-binding protein
InterPro domains
—
Matched classes
DNA/RNA polymerase and replication protein [prib, primosome, single-strand dna-binding, single-stranded dna-binding]
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