Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

17 proteins
Clear
Showing 12 of 17 matching proteins
Unreviewed
RNA-binding / RNA metabolism protein
Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
UniProt ID
Q38DE2
Related PDBs
7c4b,7c47,7c4c
InterPro family
IPR052144: piRNA biogenesis EXD1-related protein
InterPro domains
IPR001878: Zinc finger, CCHC-type; IPR002562: 3'-5' exonuclease domain
Matched classes
Argonaute / RNAi-related protein [exd1, pirna] || Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, ribonuclease] || RNA-binding / RNA metabolism protein [pirna biogenesis]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
Q96LI5
Related PDBs
3ngq
InterPro family
IPR050410: CCR4/nocturin mRNA turnover and transcription
InterPro domains
IPR005135: Endonuclease/exonuclease/phosphatase; IPR034967: CCR4-NOT transcription complex subunit 6-like
Matched classes
Nuclease / DNA-RNA repair enzyme [endonuclease, exonuclease, nuclease] || RNA-binding / RNA metabolism protein [ccr4, mrna turnover, nocturin, rna turnover]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
UniProt ID
Q9UXC2
Related PDBs
2c37
InterPro family
IPR011807: Exosome complex component Rrp41; IPR050080: Ribonuclease PH
InterPro domains
IPR001247: Exoribonuclease, phosphorolytic domain 1; IPR015847: Exoribonuclease, phosphorolytic domain 2
Matched classes
Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease, ribonuclease ph, rnase, rrp41] || Translation / ribosomal protein [ribosomal]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
Q8TEQ6
Related PDBs
5h1m,5h3t,5tef,5tha
InterPro family
IPR052640: Gem-associated protein 5
InterPro domains
IPR056420: Gem-associated protein 5, RBS domain; IPR056421: Gem-associated protein 5, TPR domain; IPR056424: Gem-associated protein 5, second beta-propeller domain; IPR056432: Gem-associated protein 5, first beta-propeller
Matched classes
RNA-binding / RNA metabolism protein [gem-associated]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
P09651
Related PDBs
9f4g,9f4h,9f4n,9f4s,9f4u,9f4k,9f4o,9f50,9f4j,9f4q,9f4p,9f4w,9f53,9f5f,9f5e,9f4z,9f5d,9f4d,9f4x,9f4y,9hql,9hq9
InterPro family
—
InterPro domains
IPR000504: RNA recognition motif domain; IPR021662: Heterogeneous nuclear ribonucleoprotein A1/A2, C-terminal; IPR034516: hnRNP A1/3, RNA recognition motif 2; IPR034845: hnRNP A1, RNA recognition motif 1
Matched classes
RNA-binding / RNA metabolism protein [rna-binding] || DNA/RNA modification or nucleotide metabolism enzyme [nucleotide]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)
UniProt ID
C4M1P9
Related PDBs
4peg
InterPro family
—
InterPro domains
IPR004843: Calcineurin-like, phosphoesterase domain; IPR041816: Lariat debranching enzyme, N-terminal metallophosphatase domain; IPR049499: Dbr1, C-terminal domain
Matched classes
RNA-binding / RNA metabolism protein
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843)
UniProt ID
P08965
Related PDBs
7dus
InterPro family
—
InterPro domains
IPR000504: RNA recognition motif domain; IPR007201: Mei2-like, C-terminal RNA recognition motif; IPR034862: Fungal Mei2-like, RNA recognition motif 3; IPR034863: Fungal Mei2-like, RNA recognition motif 2
Matched classes
RNA-binding / RNA metabolism protein [rna-binding] || DNA/RNA modification or nucleotide metabolism enzyme [nucleotide]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
UniProt ID
Q5JFX3
Related PDBs
9ld3,9ldh,9ldi
InterPro family
IPR002745: Phosphotransferase KptA/Tpt1; IPR022928: RNA 2'-phosphotransferase KptA, putative
InterPro domains
—
Matched classes
RNA-binding / RNA metabolism protein [rna 2'-phosphotransferase]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Enterobacteria phage T4
UniProt ID
P32277
Related PDBs
1s68
InterPro family
IPR012647: RNA ligase, Rnl2; IPR044263: RNA ligase 2, viral
InterPro domains
IPR021122: RNA ligase domain, REL/Rln2; IPR040609: RNA ligase 2, C-terminal
Matched classes
Viral replication / viral nucleic-acid-related protein [viral] || RNA-binding / RNA metabolism protein [rna ligase]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A6X3
Related PDBs
3qo3,3res,6qlb
InterPro family
IPR005001: RNA-binding protein Hfq
InterPro domains
IPR047575: Sm domain
Matched classes
RNA-binding / RNA metabolism protein [hfq, rna-binding]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
UniProt ID
Q9HUM0
Related PDBs
3qui,4j5y,4j6w,4j6x
InterPro family
IPR005001: RNA-binding protein Hfq
InterPro domains
IPR047575: Sm domain
Matched classes
RNA-binding / RNA metabolism protein [hfq, rna-binding]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
O75533
Related PDBs
3lqv,5zya,6en4,7b0i,7b91,7b92,7b9c,7evo,7opi,7onb,7omf,8hk1
InterPro family
IPR038737: Splicing factor 3B subunit 1-like
InterPro domains
IPR015016: Splicing factor 3B subunit 1; IPR054573: Phosphatase PP2A regulatory subunit A/Splicing factor 3B subunit 1-like, HEAT repeat
Matched classes
RNA-binding / RNA metabolism protein [splicing factor]
View protein