Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

7 proteins
Clear
Showing 7 of 7 matching proteins
Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
UniProt ID
P03366
Related PDBs
3isn,8dxg,8dx2
InterPro family
InterPro domains
IPR000071: Immunodeficiency lentiviral matrix, N-terminal; IPR000477: Reverse transcriptase domain; IPR001037: Integrase, C-terminal, retroviral; IPR001584: Integrase, catalytic core; IPR001878: Zinc finger, CCHC-type; IPR001995: Peptidase A2A, retrovirus, catalytic; IPR002156: Ribonuclease H domain; IPR003308: Integrase, N-terminal zinc-binding domain; IPR010659: Reverse transcriptase connection; IPR010661: Reverse transcriptase thumb; IPR018061: Retropepsins; IPR034170: Retropepsin-like catalytic domain; IPR045345: Retroviral nucleocapsid Gag protein p24, C-terminal domain
Matched classes
Viral replication / viral nucleic-acid-related protein [viral] || DNA/RNA polymerase and replication protein [polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease] || Other enzyme / miscellaneous [peptidase]
View protein
Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Hepatitis C virus genotype 1b (strain HC-J4)
UniProt ID
O92972
Related PDBs
1nb6,4ry5
InterPro family
IPR002166: RNA dependent RNA polymerase, hepatitis C virus
InterPro domains
IPR000745: Hepatitis C virus, Non-structural protein NS4a; IPR001490: Hepatitis C virus, Non-structural protein NS4b; IPR001650: Helicase, C-terminal domain-like; IPR002518: Hepatitis C virus, Non-structural protein NS2; IPR002519: Hepatitis C virus, Envelope glycoprotein E1; IPR002521: Hepatitis C virus, Core protein, C-terminal; IPR002522: Hepatitis C virus, Core protein, N-terminal; IPR002531: Hepatitis C virus, Non-structural protein E2/NS1; IPR002868: Hepatitis C virus, Non-structural 5a protein; IPR004109: Hepatitis C virus, NS3 protease; IPR007094: RNA-directed RNA polymerase, catalytic domain; IPR011492: Non-structural protein NS3-like, DEAD-box helicase, flavivirus; IPR013192: Hepatitis C virus, Non-structural 5a protein, domain 1a; IPR013193: Hepatitis C virus non-structural 5a, 1B domain; IPR014001: Helicase superfamily 1/2, ATP-binding domain; IPR024350: Hepatitus C virus, Non-structural 5a protein, C-terminal; IPR049913: Hepatitis C virus, p7 channel; IPR054175: NS3 RNA helicase, C-terminal helical domain
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [cas ] || Viral replication / viral nucleic-acid-related protein [hepatitis c] || DNA/RNA polymerase and replication protein [polymerase, rna polymerase] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside] || Other enzyme / miscellaneous [peptidase]
View protein
Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Vesicular stomatitis Indiana virus (strain 98COE North America)
UniProt ID
Q77E03
Related PDBs
3hhw
InterPro family
InterPro domains
IPR000448: Rhabdovirus nucleocapsid
Matched classes
Viral replication / viral nucleic-acid-related protein
View protein
Viral replication / viral nucleic-acid-related protein
Organism
Influenza A virus
UniProt ID
C6H0Y9
Related PDBs
6v53,6v6x,6vl3,6wij,7kop,7k77,7kaf,7umr,7uuh,8dvo,8dip
InterPro family
IPR001009: Influenza RNA-dependent RNA polymerase subunit PA
InterPro domains
Matched classes
Viral replication / viral nucleic-acid-related protein [influenza, rna-dependent rna polymerase] || DNA/RNA polymerase and replication protein [polymerase, rna polymerase, rna-dependent rna polymerase] || Nuclease / DNA-RNA repair enzyme [endonuclease, nuclease]
View protein
Unreviewed
Viral replication / viral nucleic-acid-related protein
Organism
human metapneumovirus
UniProt ID
Q8QN58
Related PDBs
4cs9
InterPro family
IPR009452: Pneumovirus matrix 2-1
InterPro domains
IPR000571: Zinc finger, CCCH-type
Matched classes
Viral replication / viral nucleic-acid-related protein [matrix 2-1, pneumovirus]
View protein
Viral replication / viral nucleic-acid-related protein
Organism
Severe acute respiratory syndrome coronavirus 2
UniProt ID
P0DTD1
Related PDBs
5saf,6wlc,6wxc,7k1l,7k0r
InterPro family
IPR050534: Replicase polyprotein 1ab-like
InterPro domains
IPR001205: RNA-directed RNA polymerase, C-terminal domain; IPR002589: Macro domain; IPR007094: RNA-directed RNA polymerase, catalytic domain; IPR008740: Peptidase C30, coronavirus; IPR009461: Non-structural protein NSP16, coronavirus-like; IPR009466: Non-structural protein 14, coronavirus; IPR009469: RNA-dependent RNA polymerase, N-terminal, coronavirus; IPR013016: Peptidase C16, coronavirus; IPR014822: Non-structural protein NSP9, coronavirus; IPR014828: Non-structural protein NSP7, coronavirus; IPR014829: Non-structural protein NSP8, coronavirus; IPR018995: RNA synthesis protein NSP10, coronavirus; IPR021590: NSP1, globular domain, betacoronavirus; IPR022733: DPUP/SUD, C-terminal, betacoronavirus; IPR024358: Non-structural protein NSP3, N-terminal, betacoronavirus; IPR024375: Non-structural protein NSP3, SUD-M domain, betacoronavirus; IPR027351: (+) RNA virus helicase core domain; IPR027352: Nonstructural protein 13, zinc-binding domain, coronavirus-like; IPR032505: Non-structural protein NSP4, C-terminal, coronavirus; IPR032592: Non-structural protein NSP3, nucleic acid-binding domain, betacoronavirus; IPR041679: DNA2/NAM7 helicase-like, C-terminal; IPR043606: Coronavirus replicase NSP15, N-terminal oligomerization; IPR043608: Nonstructural protein 15, middle domain, coronavirus; IPR043609: NendoU domain, nidovirus; IPR043610: Non-structural protein 6, coronavirus; IPR043611: Coronavirus replicase NSP3, C-terminal; IPR043612: Non-structural protein NSP4, N-terminal, coronavirus; IPR043613: Non-structural protein 2, C-terminal domain, coronavirus; IPR043615: Nonstructural protein 2, N-terminal domain, coronavirus; IPR044315: Nonstructural protein 14, betacoronavirus; IPR044322: Nonstructural protein 15, middle domain, alpha/betacoronavirus; IPR044330: Nonstructural protein 15, N-terminal domain, alpha/beta-coronavirus; IPR044343: Nonstructural protein 13, 1B domain, coronavirus; IPR044351: RNA-dependent RNA polymerase, SARS-CoV-like; IPR044353: NSP3, second ubiquitin-like (Ubl) domain, coronavirus; IPR044357: NSP3, first ubiquitin-like (Ubl) domain, coronavirus; IPR044367: Non-structural protein 6, betacoronavirus; IPR044371: Non-structural protein 3, X-domain-like; IPR044389: Non-structural protein 2, SARS-CoV-like; IPR044401: NSP15, NendoU domain, coronavirus; IPR044863: Nidovirus RdRp-associated nucleotidyl transferase (NiRAN) domain; IPR044864: Non-structural protein NSP3, SUD-N (Mac2) domain, betacoronavirus; IPR046435: NSP14, guanine-N7-methyltransferase domain, coronavirus; IPR046436: Nidovirus 3'-5' exoribonuclease domain; IPR046438: Nidovirus 2-O-methyltransferase; IPR046440: Arterivirus Nsp11 N-terminal/Coronavirus NSP15 middle domain; IPR046441: RNA-dependent RNA polymerase, coronavirus; IPR046442: NSP1, C-terminal domain, betacoronavirus; IPR046443: NSP1, globular domain, alpha/betacoronavirus; IPR047566: Coronavirus replicase NSP3, Y domain; IPR047567: Non-structural protein NSP3, group 2-specific marker domain, betacoronavirus; IPR047570: NSP12, interface domain, coronavirus; IPR047573: Non-structural protein 2, middle domain, coronavirus; IPR048672: Nonstructural protein 13, zinc-binding domain, coronavirus; IPR048673: Nonstructural protein 13, stalk domain, coronavirus; IPR049894: Coronavirus NSP3, 3Ecto domain
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [cas ] || Viral replication / viral nucleic-acid-related protein [betacoronavirus, coronavirus, polyprotein 1ab, rdrp, replicase, rna-dependent rna polymerase, viral] || DNA/RNA polymerase and replication protein [polymerase, replicase, rna polymerase, rna-dependent rna polymerase] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease] || DNA/RNA modification or nucleotide metabolism enzyme [methyltransferase, nucleoside] || Other enzyme / miscellaneous [peptidase]
View protein
Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Severe acute respiratory syndrome coronavirus 2
UniProt ID
P0DTC2
Related PDBs
8p9y
InterPro family
IPR042578: Spike glycoprotein, betacoronavirus
InterPro domains
IPR002552: Spike glycoprotein S2, coronavirus; IPR018548: Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirus; IPR032500: Spike glycoprotein S1, N-terminal domain, betacoronavirus-like; IPR043607: Coronavirus spike glycoprotein S1, C-terminal; IPR044341: Spike (S) protein S1 subunit, N-terminal domain, SARS-CoV-like; IPR044366: Spike (S) protein S1 subunit, receptor-binding domain, SARS-CoV-2; IPR044873: Spike glycoprotein S2, coronavirus, heptad repeat 1; IPR044874: Spike glycoprotein S2, coronavirus, heptad repeat 2
Matched classes
Viral replication / viral nucleic-acid-related protein [betacoronavirus, coronavirus, spike glycoprotein]
View protein