Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

77 proteins
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Showing 12 of 77 matching proteins
Unreviewed
Nuclease / DNA-RNA repair enzyme
Organism
Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
UniProt ID
Q8PYK9
Related PDBs
7vji,7vjb,7vjh,7vj7,7vje,7vja,7vjj,7vjk,7vjg
InterPro family
IPR008148: DNA photolyase class 2; IPR052219: DNA Photolyase Class-2
InterPro domains
IPR006050: DNA photolyase, N-terminal
Matched classes
Nuclease / DNA-RNA repair enzyme [photolyase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus aquaticus
UniProt ID
P19821
Related PDBs
5ktq
InterPro family
IPR002298: DNA polymerase A; IPR018320: DNA polymerase 1
InterPro domains
IPR001098: DNA-directed DNA polymerase, family A, palm domain; IPR002421: 5'-3' exonuclease; IPR003583: Helix-hairpin-helix DNA-binding motif, class 1; IPR015361: Taq polymerase, thermostable, exonuclease region; IPR020045: DNA polymerase I-like, H3TH domain; IPR020046: 5'-3' exonuclease, alpha-helical arch, N-terminal
Matched classes
DNA/RNA polymerase and replication protein [dna polymerase, dna-directed dna polymerase, polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, ribonuclease]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Homo sapiens
UniProt ID
O75417
Related PDBs
9osy
InterPro family
IPR002298: DNA polymerase A
InterPro domains
IPR001098: DNA-directed DNA polymerase, family A, palm domain; IPR001650: Helicase, C-terminal domain-like; IPR011545: DEAD/DEAH-box helicase domain; IPR014001: Helicase superfamily 1/2, ATP-binding domain; IPR046931: DNA polymerase theta-like, helix-turn-helix domain; IPR048960: POLQ-like, helical domain; IPR057220: Domain of unknown function DUF7898
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [cas ] || DNA/RNA polymerase and replication protein [dna polymerase, dna-directed dna polymerase, polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside] || Other enzyme / miscellaneous [duf]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia phage RB69
UniProt ID
Q38087
Related PDBs
1ih7,1waf,1waj,3cfo,4i9l,7f4y
InterPro family
IPR006172: DNA-directed DNA polymerase, family B; IPR034749: DNA-directed DNA polymerase T4 type; IPR050240: DNA polymerase type-B
InterPro domains
IPR006133: DNA-directed DNA polymerase, family B, exonuclease domain; IPR006134: DNA-directed DNA polymerase, family B, multifunctional domain
Matched classes
DNA/RNA polymerase and replication protein [dna polymerase, dna-directed dna polymerase, polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, ribonuclease]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
UniProt ID
P08518
Related PDBs
1twa,1twh,1twg,1twc,1twf
InterPro family
IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR007646: RNA polymerase Rpb2, domain 4; IPR007647: RNA polymerase Rpb2, domain 5
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8V2
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR010243: DNA-directed RNA polymerase beta subunit, bacterial-type; IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
UniProt ID
Q8RQE9
Related PDBs
1zyr,2a6h
InterPro family
IPR010243: DNA-directed RNA polymerase beta subunit, bacterial-type; IPR015712: DNA-directed RNA polymerase, subunit 2
InterPro domains
IPR007120: DNA-directed RNA polymerase, subunit 2, hybrid-binding domain; IPR007641: RNA polymerase Rpb2, domain 7; IPR007642: RNA polymerase Rpb2, domain 2; IPR007644: RNA polymerase, beta subunit, protrusion; IPR007645: RNA polymerase Rpb2, domain 3; IPR019462: DNA-directed RNA polymerase, beta subunit, external 1 domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A8T7
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR012754: DNA-directed RNA polymerase, subunit beta-prime, bacterial type; IPR045867: DNA-directed RNA polymerase, subunit beta-prime
InterPro domains
IPR000722: RNA polymerase, alpha subunit; IPR006592: RNA polymerase, N-terminal; IPR007066: RNA polymerase Rpb1, domain 3; IPR007080: RNA polymerase Rpb1, domain 1; IPR007081: RNA polymerase Rpb1, domain 5; IPR007083: RNA polymerase Rpb1, domain 4
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
View protein
Reviewed
DNA/RNA polymerase and replication protein
Organism
Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
UniProt ID
Q8RQE8
Related PDBs
1zyr,2a6h
InterPro family
IPR012754: DNA-directed RNA polymerase, subunit beta-prime, bacterial type; IPR045867: DNA-directed RNA polymerase, subunit beta-prime
InterPro domains
IPR000722: RNA polymerase, alpha subunit; IPR006592: RNA polymerase, N-terminal; IPR007066: RNA polymerase Rpb1, domain 3; IPR007080: RNA polymerase Rpb1, domain 1; IPR007081: RNA polymerase Rpb1, domain 5; IPR007083: RNA polymerase Rpb1, domain 4; IPR048566: DNA-directed RNA polymerase subunit beta', hybrid domain
Matched classes
DNA/RNA polymerase and replication protein [dna-directed rna polymerase, polymerase, rna polymerase]
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Reviewed
Translation / ribosomal protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0CE47
Related PDBs
8fr3
InterPro family
IPR004541: Translation elongation factor EFTu/EF1A, bacterial/organelle; IPR050055: Elongation factor Tu GTPase
InterPro domains
IPR000795: Translational (tr)-type GTP-binding domain; IPR004160: Translation elongation factor EFTu/EF1A, C-terminal; IPR004161: Translation elongation factor EFTu-like, domain 2; IPR005225: Small GTP-binding domain; IPR033720: Elongation factor Tu, domain 2; IPR041709: Elongation factor Tu (EF-Tu), GTP-binding domain
Matched classes
Translation / ribosomal protein [ef-tu, ef1a, eftu, elongation factor, initiation factor, translation elongation] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside]
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Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Homo sapiens
UniProt ID
Q9UQ84
Related PDBs
9seb,9smo
InterPro family
IPR006084: XPG/Rad2 endonuclease
InterPro domains
IPR006085: XPG, N-terminal; IPR006086: XPG-I domain; IPR037315: Exonuclease-1, H3TH domain; IPR044752: Exonuclease 1-like, PIN-like domain
Matched classes
Nuclease / DNA-RNA repair enzyme [endonuclease, exonuclease, nuclease, rad2, xpg]
View protein
Reviewed
RNA-binding / RNA metabolism protein
Organism
Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
UniProt ID
Q9UXC2
Related PDBs
2c37
InterPro family
IPR011807: Exosome complex component Rrp41; IPR050080: Ribonuclease PH
InterPro domains
IPR001247: Exoribonuclease, phosphorolytic domain 1; IPR015847: Exoribonuclease, phosphorolytic domain 2
Matched classes
Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease, ribonuclease ph, rnase, rrp41] || Translation / ribosomal protein [ribosomal]
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