Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

77 proteins
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Showing 12 of 77 matching proteins
Reviewed
RNA-binding / RNA metabolism protein
Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843)
UniProt ID
P08965
Related PDBs
7dus
InterPro family
InterPro domains
IPR000504: RNA recognition motif domain; IPR007201: Mei2-like, C-terminal RNA recognition motif; IPR034862: Fungal Mei2-like, RNA recognition motif 3; IPR034863: Fungal Mei2-like, RNA recognition motif 2
Matched classes
RNA-binding / RNA metabolism protein [rna-binding] || DNA/RNA modification or nucleotide metabolism enzyme [nucleotide]
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Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Homo sapiens
UniProt ID
O15527
Related PDBs
6rlw,7ayy
InterPro family
IPR004577: 8-oxoguanine DNA-glycosylase; IPR052054: Oxidative DNA damage repair enzyme
InterPro domains
IPR003265: HhH-GPD domain; IPR012904: 8-oxoguanine DNA glycosylase, N-terminal
Matched classes
Nuclease / DNA-RNA repair enzyme [8-oxoguanine, dna repair, dna-glycosylase, glycosylase, oxidative dna damage]
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Transcription factor / transcription regulator
Organism
Homo sapiens
UniProt ID
P19838
Related PDBs
8tqd
InterPro family
IPR000451: NF-kappa-B/Dorsal
InterPro domains
IPR000488: Death domain; IPR002909: IPT domain; IPR011539: Rel homology domain, DNA-binding domain; IPR030503: Nuclear factor NF-kappa-B, p105 subunit, Rel homology domain, N-terminal; IPR032397: Rel homology dimerisation domain; IPR033926: NFkappaB IPT domain; IPR047096: Nuclear factor NF-kappa-B p105 subunit, death domain
Matched classes
Transcription factor / transcription regulator [dorsal, nf-kappa-b, p53, transcription factor]
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Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Vesicular stomatitis Indiana virus (strain 98COE North America)
UniProt ID
Q77E03
Related PDBs
3hhw
InterPro family
InterPro domains
IPR000448: Rhabdovirus nucleocapsid
Matched classes
Viral replication / viral nucleic-acid-related protein
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
UniProt ID
P29468
Related PDBs
1fa0
InterPro family
IPR014492: Poly(A) polymerase
InterPro domains
IPR007010: Poly(A) polymerase, RNA-binding domain; IPR007012: Poly(A) polymerase, central domain; IPR048840: Poly(A) polymerase, nucleotidyltransferase domain
Matched classes
DNA/RNA polymerase and replication protein [nucleotidyltransferase, poly(a) polymerase, polymerase] || RNA-binding / RNA metabolism protein [rna-binding]
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DNA/RNA polymerase and replication protein
Organism
Vaccinia virus (strain Western Reserve)
UniProt ID
P23371
Related PDBs
2ga9
InterPro family
IPR004976: Poly(A) polymerase catalytic subunit, Poxvirus
InterPro domains
IPR024231: Poly(A) polymerase, nucleotidyltransferase domain, Poxvirus; IPR024397: Poxvirus poly(A) polymerase, catalytic subunit, C-terminal; IPR024398: Poxvirus poly(A) polymerase, catalytic subunit, N-terminal
Matched classes
Viral replication / viral nucleic-acid-related protein [poxvirus] || DNA/RNA polymerase and replication protein [nucleotidyltransferase, poly(a) polymerase, polymerase]
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Viral replication / viral nucleic-acid-related protein
Organism
Influenza A virus
UniProt ID
C6H0Y9
Related PDBs
6v53,6v6x,6vl3,6wij,7kop,7k77,7kaf,7umr,7uuh,8dvo,8dip
InterPro family
IPR001009: Influenza RNA-dependent RNA polymerase subunit PA
InterPro domains
Matched classes
Viral replication / viral nucleic-acid-related protein [influenza, rna-dependent rna polymerase] || DNA/RNA polymerase and replication protein [polymerase, rna polymerase, rna-dependent rna polymerase] || Nuclease / DNA-RNA repair enzyme [endonuclease, nuclease]
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RNA-binding / RNA metabolism protein
Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
UniProt ID
Q5JFX3
Related PDBs
9ld3,9ldh,9ldi
InterPro family
IPR002745: Phosphotransferase KptA/Tpt1; IPR022928: RNA 2'-phosphotransferase KptA, putative
InterPro domains
Matched classes
RNA-binding / RNA metabolism protein [rna 2'-phosphotransferase]
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Reviewed
Argonaute / RNAi-related protein
Organism
Homo sapiens
UniProt ID
Q9UKV8
Related PDBs
3lud,3luj,3qx8,3qx9,7d7u,9bf0
InterPro family
IPR028602: Protein argonaute-2
InterPro domains
IPR003100: PAZ domain; IPR003165: Piwi domain; IPR014811: Argonaute, linker 1 domain; IPR032472: Argonaute linker 2 domain; IPR032473: Protein argonaute, Mid domain; IPR032474: Protein argonaute, N-terminal; IPR045246: Argonaute-like, PIWI domain
Matched classes
Argonaute / RNAi-related protein [argonaute, piwi] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease]
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Unreviewed
Viral replication / viral nucleic-acid-related protein
Organism
human metapneumovirus
UniProt ID
Q8QN58
Related PDBs
4cs9
InterPro family
IPR009452: Pneumovirus matrix 2-1
InterPro domains
IPR000571: Zinc finger, CCCH-type
Matched classes
Viral replication / viral nucleic-acid-related protein [matrix 2-1, pneumovirus]
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Reviewed
Other enzyme / miscellaneous
Organism
Homo sapiens
UniProt ID
P00734
Related PDBs
2h9t,2gp9,3bf6,3dd2,3u8r,3u69,4rko,5e8e
InterPro family
IPR001314: Peptidase S1A, chymotrypsin family; IPR003966: Prothrombin/thrombin; IPR051659: Serine Protease S1 Domain-Containing Protein
InterPro domains
IPR000001: Kringle; IPR000294: Gamma-carboxyglutamic acid-rich (GLA) domain; IPR001254: Serine proteases, trypsin domain; IPR018992: Thrombin light chain
Matched classes
Other enzyme / miscellaneous [chymotrypsin, peptidase, prothrombin, serine protease, thrombin]
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Viral replication / viral nucleic-acid-related protein
Organism
Severe acute respiratory syndrome coronavirus 2
UniProt ID
P0DTD1
Related PDBs
5saf,6wlc,6wxc,7k1l,7k0r
InterPro family
IPR050534: Replicase polyprotein 1ab-like
InterPro domains
IPR001205: RNA-directed RNA polymerase, C-terminal domain; IPR002589: Macro domain; IPR007094: RNA-directed RNA polymerase, catalytic domain; IPR008740: Peptidase C30, coronavirus; IPR009461: Non-structural protein NSP16, coronavirus-like; IPR009466: Non-structural protein 14, coronavirus; IPR009469: RNA-dependent RNA polymerase, N-terminal, coronavirus; IPR013016: Peptidase C16, coronavirus; IPR014822: Non-structural protein NSP9, coronavirus; IPR014828: Non-structural protein NSP7, coronavirus; IPR014829: Non-structural protein NSP8, coronavirus; IPR018995: RNA synthesis protein NSP10, coronavirus; IPR021590: NSP1, globular domain, betacoronavirus; IPR022733: DPUP/SUD, C-terminal, betacoronavirus; IPR024358: Non-structural protein NSP3, N-terminal, betacoronavirus; IPR024375: Non-structural protein NSP3, SUD-M domain, betacoronavirus; IPR027351: (+) RNA virus helicase core domain; IPR027352: Nonstructural protein 13, zinc-binding domain, coronavirus-like; IPR032505: Non-structural protein NSP4, C-terminal, coronavirus; IPR032592: Non-structural protein NSP3, nucleic acid-binding domain, betacoronavirus; IPR041679: DNA2/NAM7 helicase-like, C-terminal; IPR043606: Coronavirus replicase NSP15, N-terminal oligomerization; IPR043608: Nonstructural protein 15, middle domain, coronavirus; IPR043609: NendoU domain, nidovirus; IPR043610: Non-structural protein 6, coronavirus; IPR043611: Coronavirus replicase NSP3, C-terminal; IPR043612: Non-structural protein NSP4, N-terminal, coronavirus; IPR043613: Non-structural protein 2, C-terminal domain, coronavirus; IPR043615: Nonstructural protein 2, N-terminal domain, coronavirus; IPR044315: Nonstructural protein 14, betacoronavirus; IPR044322: Nonstructural protein 15, middle domain, alpha/betacoronavirus; IPR044330: Nonstructural protein 15, N-terminal domain, alpha/beta-coronavirus; IPR044343: Nonstructural protein 13, 1B domain, coronavirus; IPR044351: RNA-dependent RNA polymerase, SARS-CoV-like; IPR044353: NSP3, second ubiquitin-like (Ubl) domain, coronavirus; IPR044357: NSP3, first ubiquitin-like (Ubl) domain, coronavirus; IPR044367: Non-structural protein 6, betacoronavirus; IPR044371: Non-structural protein 3, X-domain-like; IPR044389: Non-structural protein 2, SARS-CoV-like; IPR044401: NSP15, NendoU domain, coronavirus; IPR044863: Nidovirus RdRp-associated nucleotidyl transferase (NiRAN) domain; IPR044864: Non-structural protein NSP3, SUD-N (Mac2) domain, betacoronavirus; IPR046435: NSP14, guanine-N7-methyltransferase domain, coronavirus; IPR046436: Nidovirus 3'-5' exoribonuclease domain; IPR046438: Nidovirus 2-O-methyltransferase; IPR046440: Arterivirus Nsp11 N-terminal/Coronavirus NSP15 middle domain; IPR046441: RNA-dependent RNA polymerase, coronavirus; IPR046442: NSP1, C-terminal domain, betacoronavirus; IPR046443: NSP1, globular domain, alpha/betacoronavirus; IPR047566: Coronavirus replicase NSP3, Y domain; IPR047567: Non-structural protein NSP3, group 2-specific marker domain, betacoronavirus; IPR047570: NSP12, interface domain, coronavirus; IPR047573: Non-structural protein 2, middle domain, coronavirus; IPR048672: Nonstructural protein 13, zinc-binding domain, coronavirus; IPR048673: Nonstructural protein 13, stalk domain, coronavirus; IPR049894: Coronavirus NSP3, 3Ecto domain
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [cas ] || Viral replication / viral nucleic-acid-related protein [betacoronavirus, coronavirus, polyprotein 1ab, rdrp, replicase, rna-dependent rna polymerase, viral] || DNA/RNA polymerase and replication protein [polymerase, replicase, rna polymerase, rna-dependent rna polymerase] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease] || DNA/RNA modification or nucleotide metabolism enzyme [methyltransferase, nucleoside] || Other enzyme / miscellaneous [peptidase]
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