Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

77 proteins
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Showing 12 of 77 matching proteins
Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Homo sapiens
UniProt ID
P39748
Related PDBs
9rci,9rdi
InterPro family
IPR006084: XPG/Rad2 endonuclease; IPR023426: Flap endonuclease 1
InterPro domains
IPR006085: XPG, N-terminal; IPR006086: XPG-I domain
Matched classes
Nuclease / DNA-RNA repair enzyme [endonuclease, exonuclease, flap endonuclease, nuclease, rad2, xpg]
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Reviewed
Other enzyme / miscellaneous
Organism
Bos taurus
UniProt ID
P21146
Related PDBs
3pvu,5he0,5he3,8jpb,8jpd,8jpc
InterPro family
IPR000239: GPCR kinase
InterPro domains
IPR000719: Protein kinase domain; IPR000961: AGC-kinase, C-terminal; IPR001849: Pleckstrin homology domain; IPR016137: RGS domain
Matched classes
Other enzyme / miscellaneous [gpcr kinase, kinase]
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Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
UniProt ID
P03366
Related PDBs
3isn,8dxg,8dx2
InterPro family
—
InterPro domains
IPR000071: Immunodeficiency lentiviral matrix, N-terminal; IPR000477: Reverse transcriptase domain; IPR001037: Integrase, C-terminal, retroviral; IPR001584: Integrase, catalytic core; IPR001878: Zinc finger, CCHC-type; IPR001995: Peptidase A2A, retrovirus, catalytic; IPR002156: Ribonuclease H domain; IPR003308: Integrase, N-terminal zinc-binding domain; IPR010659: Reverse transcriptase connection; IPR010661: Reverse transcriptase thumb; IPR018061: Retropepsins; IPR034170: Retropepsin-like catalytic domain; IPR045345: Retroviral nucleocapsid Gag protein p24, C-terminal domain
Matched classes
Viral replication / viral nucleic-acid-related protein [viral] || DNA/RNA polymerase and replication protein [polymerase, rna polymerase] || Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease] || Other enzyme / miscellaneous [peptidase]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
Q8TEQ6
Related PDBs
5h1m,5h3t,5tef,5tha
InterPro family
IPR052640: Gem-associated protein 5
InterPro domains
IPR056420: Gem-associated protein 5, RBS domain; IPR056421: Gem-associated protein 5, TPR domain; IPR056424: Gem-associated protein 5, second beta-propeller domain; IPR056432: Gem-associated protein 5, first beta-propeller
Matched classes
RNA-binding / RNA metabolism protein [gem-associated]
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Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Hepatitis C virus genotype 1b (strain HC-J4)
UniProt ID
O92972
Related PDBs
1nb6,4ry5
InterPro family
IPR002166: RNA dependent RNA polymerase, hepatitis C virus
InterPro domains
IPR000745: Hepatitis C virus, Non-structural protein NS4a; IPR001490: Hepatitis C virus, Non-structural protein NS4b; IPR001650: Helicase, C-terminal domain-like; IPR002518: Hepatitis C virus, Non-structural protein NS2; IPR002519: Hepatitis C virus, Envelope glycoprotein E1; IPR002521: Hepatitis C virus, Core protein, C-terminal; IPR002522: Hepatitis C virus, Core protein, N-terminal; IPR002531: Hepatitis C virus, Non-structural protein E2/NS1; IPR002868: Hepatitis C virus, Non-structural 5a protein; IPR004109: Hepatitis C virus, NS3 protease; IPR007094: RNA-directed RNA polymerase, catalytic domain; IPR011492: Non-structural protein NS3-like, DEAD-box helicase, flavivirus; IPR013192: Hepatitis C virus, Non-structural 5a protein, domain 1a; IPR013193: Hepatitis C virus non-structural 5a, 1B domain; IPR014001: Helicase superfamily 1/2, ATP-binding domain; IPR024350: Hepatitus C virus, Non-structural 5a protein, C-terminal; IPR049913: Hepatitis C virus, p7 channel; IPR054175: NS3 RNA helicase, C-terminal helical domain
Matched classes
CRISPR-Cas / prokaryotic antiviral defense protein [cas ] || Viral replication / viral nucleic-acid-related protein [hepatitis c] || DNA/RNA polymerase and replication protein [polymerase, rna polymerase] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside] || Other enzyme / miscellaneous [peptidase]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
P09651
Related PDBs
9f4g,9f4h,9f4n,9f4s,9f4u,9f4k,9f4o,9f50,9f4j,9f4q,9f4p,9f4w,9f53,9f5f,9f5e,9f4z,9f5d,9f4d,9f4x,9f4y,9hql,9hq9
InterPro family
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InterPro domains
IPR000504: RNA recognition motif domain; IPR021662: Heterogeneous nuclear ribonucleoprotein A1/A2, C-terminal; IPR034516: hnRNP A1/3, RNA recognition motif 2; IPR034845: hnRNP A1, RNA recognition motif 1
Matched classes
RNA-binding / RNA metabolism protein [rna-binding] || DNA/RNA modification or nucleotide metabolism enzyme [nucleotide]
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Reviewed
Other enzyme / miscellaneous
Organism
Homo sapiens
UniProt ID
P01857
Related PDBs
5k64
InterPro family
IPR050380: Immune Recognition and Response Modulators
InterPro domains
IPR003597: Immunoglobulin C1-set; IPR007110: Immunoglobulin-like domain
Matched classes
Other enzyme / miscellaneous [immune recognition]
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Unreviewed
Transcription factor / transcription regulator
Organism
Drosophila melanogaster
UniProt ID
Q9VAA9
Related PDBs
6kcu
InterPro family
—
InterPro domains
IPR000313: PWWP domain; IPR021567: Lens epithelium-derived growth factor, integrase-binding domain
Matched classes
Transcription factor / transcription regulator
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Reviewed
Translation / ribosomal protein
Organism
Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
UniProt ID
P60493
Related PDBs
1v8q
InterPro family
IPR001684: Large ribosomal subunit protein bL27
InterPro domains
—
Matched classes
Translation / ribosomal protein [ribosomal]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)
UniProt ID
C4M1P9
Related PDBs
4peg
InterPro family
—
InterPro domains
IPR004843: Calcineurin-like, phosphoesterase domain; IPR041816: Lariat debranching enzyme, N-terminal metallophosphatase domain; IPR049499: Dbr1, C-terminal domain
Matched classes
RNA-binding / RNA metabolism protein
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Reviewed
Other enzyme / miscellaneous
Organism
Gallus gallus
UniProt ID
P00698
Related PDBs
4n0j,4prq,4pru,8aj3,8aj4
InterPro family
IPR000974: Glycoside hydrolase, family 22, lysozyme; IPR001916: Glycoside hydrolase, family 22
InterPro domains
IPR019799: Glycoside hydrolase family 22 domain
Matched classes
Other enzyme / miscellaneous [glycoside hydrolase, lysozyme]
View protein
Unreviewed
Transcription factor / transcription regulator
Organism
Staphylococcus aureus
UniProt ID
Q5Y812
Related PDBs
5ffz
InterPro family
—
InterPro domains
IPR000835: MarR-type HTH domain
Matched classes
Transcription factor / transcription regulator
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