Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

77 proteins
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Showing 12 of 77 matching proteins
Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Homo sapiens
UniProt ID
Q96NY9
Related PDBs
9f9l,9f9k
InterPro family
IPR033309: Crossover junction endonuclease Mus81
InterPro domains
IPR006166: ERCC4 domain; IPR010996: Crossover junction endonuclease MUS81-like, HHH domain; IPR047416: MUS81, XPF-like nuclease domain; IPR047417: MUS81, winged helix domain
Matched classes
DNA/RNA polymerase and replication protein [dna polymerase, polymerase] || Nuclease / DNA-RNA repair enzyme [endonuclease, mus81, nuclease]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
Q5VYS8
Related PDBs
5w0n
InterPro family
—
InterPro domains
IPR001878: Zinc finger, CCHC-type; IPR002058: PAP/25A-associated; IPR003604: Matrin/U1-C-like, C2H2-type zinc finger; IPR045100: Terminal uridylyltransferase 4/7, nucleotidyltransferase domain; IPR054708: Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Matched classes
DNA/RNA polymerase and replication protein [nucleotidyltransferase, polymerase, rna polymerase]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Drosophila melanogaster
UniProt ID
Q9VI58
Related PDBs
5z4m,6i0s
InterPro family
—
InterPro domains
IPR054708: Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Matched classes
DNA/RNA polymerase and replication protein [nucleotidyltransferase, polymerase, rna polymerase]
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Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Mus musculus
UniProt ID
Q9R1A9
Related PDBs
6a46
InterPro family
IPR040393: Three-prime repair exonuclease 1/2
InterPro domains
IPR013520: Ribonuclease H-like domain
Matched classes
Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, repair exonuclease, ribonuclease, three-prime repair exonuclease]
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Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Mus musculus
UniProt ID
Q91XB0
Related PDBs
2o4g,2ioc,3b6o,3b6p,7u8y,8hcc,8hcg,8hch,8hcd
InterPro family
IPR040393: Three-prime repair exonuclease 1/2
InterPro domains
IPR013520: Ribonuclease H-like domain
Matched classes
Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, repair exonuclease, ribonuclease, three-prime repair exonuclease]
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Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Homo sapiens
UniProt ID
Q9NSU2
Related PDBs
9o0y
InterPro family
IPR040393: Three-prime repair exonuclease 1/2
InterPro domains
IPR013520: Ribonuclease H-like domain
Matched classes
Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, repair exonuclease, ribonuclease, three-prime repair exonuclease]
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Reviewed
tRNA-related enzyme
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
UniProt ID
P07236
Related PDBs
4eo4
InterPro family
IPR002320: Threonine-tRNA ligase, class IIa
InterPro domains
IPR002314: Aminoacyl-tRNA synthetase, class II (G/ P/ S/T); IPR004154: Anticodon-binding; IPR006195: Aminoacyl-tRNA synthetase, class II; IPR033728: Threonine-tRNA ligase catalytic core domain; IPR047246: Threonine-tRNA ligase, class IIa, anticodon-binding domain
Matched classes
RNA-binding / RNA metabolism protein [rna ligase] || tRNA-related enzyme [aminoacyl, threonine-trna ligase, trna, trna ligase]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0AG30
Related PDBs
9ff7
InterPro family
IPR004665: Transcription termination factor Rho
InterPro domains
IPR000194: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; IPR003593: AAA+ ATPase domain; IPR011112: Rho termination factor-like, N-terminal; IPR011113: Rho termination factor, RNA-binding domain; IPR011129: Cold-shock domain; IPR041703: Transcription termination factor Rho, ATP binding domain
Matched classes
RNA-binding / RNA metabolism protein [rho, rna-binding, transcription termination factor] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside, nucleotide]
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Reviewed
Translation / ribosomal protein
Organism
Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
UniProt ID
Q980A5
Related PDBs
2pmd,3i1f,3pen,3sjz,4m53,4rd4,4rcz,4rd2
InterPro family
IPR022424: Translation initiation factor 2, gamma subunit; IPR050543: Eukaryotic Initiation Factor 2 Gamma Subunit
InterPro domains
IPR000795: Translational (tr)-type GTP-binding domain; IPR005225: Small GTP-binding domain; IPR015256: Initiation factor eIF2 gamma, C-terminal; IPR044127: Initiation factor eIF2 gamma, domain 2; IPR044128: Initiation factor eIF2 gamma, GTP-binding domain
Matched classes
Translation / ribosomal protein [ef1a, eif2, elongation factor, initiation factor, translation elongation, translation initiation] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside]
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Reviewed
tRNA-related enzyme
Organism
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
UniProt ID
P43912
Related PDBs
4yq4,4yq5,4ypy
InterPro family
IPR002649: tRNA (guanine-N1-)-methyltransferase TrmD
InterPro domains
IPR016009: tRNA methyltransferase TRMD/TRM10-type domain
Matched classes
tRNA-related enzyme [trmd, trna, trna methyltransferase] || DNA/RNA modification or nucleotide metabolism enzyme [methyltransferase]
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Reviewed
tRNA-related enzyme
Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
UniProt ID
O58843
Related PDBs
1it7,1it8
InterPro family
IPR004803: tRNA-guanine transglycosylase; IPR004804: tRNA-guanine(15) transglycosylase
InterPro domains
IPR002478: PUA domain; IPR002616: tRNA-guanine(15) transglycosylase-like; IPR004521: Uncharacterised domain CHP00451; IPR029402: tRNA-guanine transglycosylase, patch-forming domain C2; IPR032729: tRNA-guanine(15) transglycosylase, C1 domain
Matched classes
Nuclease / DNA-RNA repair enzyme [glycosylase] || tRNA-related enzyme [transglycosylase, trna, trna-guanine]
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Reviewed
tRNA-related enzyme
Organism
Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
UniProt ID
O28025
Related PDBs
3au7,4rvz,6agg
InterPro family
IPR024913: tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS; IPR053434: tRNA(Ile2) 2-agmatinylcytidine synthetase
InterPro domains
IPR004365: OB-fold nucleic acid binding domain, AA-tRNA synthetase-type; IPR013696: TiaS, FLD domain; IPR053870: TiaS-like, TCKD domain; IPR055394: TiaS, C-terminal zinc ribbon domain
Matched classes
tRNA-related enzyme [agmatinylcytidine, tias, trna]
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