Browse Proteins

Explore nucleic acid-binding proteins and their associated structural information.

77 proteins
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Showing 12 of 77 matching proteins
Reviewed
Nuclease / DNA-RNA repair enzyme
Organism
Bos taurus
UniProt ID
P61823
Related PDBs
1afk,1eow,1afl,1eos,1jn4,1rca,1rar,1ras,1o0n,1jvu,1o0o,1rnn,1rnm,1o0h,1qhc,1rob,1rnc,1rpf,1rnd,1rpg,1ruv,1u1b,1w4p,1w4o,1wbu,1w4q,1z6s,1z6d,2g8r,2w5k,2w5l,2w5g,2w5i,2w5m,2xoi,2qca,2xog,3d6p,3d6q,3d6o,3d8z,3d7b,3ev1,3d8y,3fl0,3fl1,3jw1,3dxg,3rid,4g90,4g8v,4j67,4g8y,4j69,4rsk,4wyz,4wyp,5et4,5nj7,5ogh,6gok,6pvu,6pvw,6pvx,6rsa,6xhe,6xhf,6xhc,6yo1,7p8r,7qpz,7qwh,8c3b,8oqd,8r5v,8s96,8rsa,8uaz,8ub0,8ub2,8uay
InterPro family
IPR001427: Pancreatic ribonuclease
InterPro domains
IPR023412: Ribonuclease A-domain
Matched classes
Nuclease / DNA-RNA repair enzyme [nuclease, ribonuclease]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Enterobacteria phage T4
UniProt ID
P32277
Related PDBs
1s68
InterPro family
IPR012647: RNA ligase, Rnl2; IPR044263: RNA ligase 2, viral
InterPro domains
IPR021122: RNA ligase domain, REL/Rln2; IPR040609: RNA ligase 2, C-terminal
Matched classes
Viral replication / viral nucleic-acid-related protein [viral] || RNA-binding / RNA metabolism protein [rna ligase]
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Reviewed
Transcription factor / transcription regulator
Organism
Escherichia coli (strain K12)
UniProt ID
P00579
Related PDBs
4kn7,4kn4,5uah,6byu,6cux,6n58,6n57,6psv,6psq,6psu,6psr,6pst
InterPro family
IPR028630: RNA polymerase sigma factor RpoD; IPR050239: Sigma-70 factor family, RNA polymerase initiation factors
InterPro domains
IPR000943: RNA polymerase sigma-70; IPR007127: RNA polymerase sigma factor 70, region 1.1; IPR007624: RNA polymerase sigma-70 region 3; IPR007627: RNA polymerase sigma-70 region 2; IPR007630: RNA polymerase sigma-70 region 4; IPR007631: RNA polymerase sigma factor 70, non-essential domain; IPR009042: RNA polymerase sigma-70 region 1.2; IPR012760: RNA polymerase sigma factor RpoD, C-terminal; IPR014284: RNA polymerase sigma-70-like domain
Matched classes
DNA/RNA polymerase and replication protein [polymerase, rna polymerase] || Translation / ribosomal protein [initiation factor] || Transcription factor / transcription regulator [rna polymerase initiation factor, rpod, sigma factor, sigma-70]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A6X3
Related PDBs
3qo3,3res,6qlb
InterPro family
IPR005001: RNA-binding protein Hfq
InterPro domains
IPR047575: Sm domain
Matched classes
RNA-binding / RNA metabolism protein [hfq, rna-binding]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
UniProt ID
Q9HUM0
Related PDBs
3qui,4j5y,4j6w,4j6x
InterPro family
IPR005001: RNA-binding protein Hfq
InterPro domains
IPR047575: Sm domain
Matched classes
RNA-binding / RNA metabolism protein [hfq, rna-binding]
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Reviewed
Translation / ribosomal protein
Organism
Escherichia coli (strain K12)
UniProt ID
P10121
Related PDBs
6cs8,6cvd,6dlx
InterPro family
IPR004390: Signal-recognition particle receptor FtsY
InterPro domains
IPR000897: Signal recognition particle, SRP54 subunit, GTPase domain; IPR003593: AAA+ ATPase domain; IPR013822: Signal recognition particle SRP54, helical bundle
Matched classes
Translation / ribosomal protein [ftsy, signal-recognition particle, srp receptor] || DNA/RNA modification or nucleotide metabolism enzyme [nucleoside]
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Reviewed
DNA/RNA polymerase and replication protein
Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
UniProt ID
P40947
Related PDBs
5yun,7vum
InterPro family
IPR000424: Primosome PriB/single-strand DNA-binding; IPR011344: Single-stranded DNA-binding protein
InterPro domains
—
Matched classes
DNA/RNA polymerase and replication protein [prib, primosome, single-strand dna-binding, single-stranded dna-binding]
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Unreviewed
Nuclease / DNA-RNA repair enzyme
Organism
Deinococcus radiodurans
UniProt ID
D0EM60
Related PDBs
5f54
InterPro family
IPR004610: Bacterial RecJ exonuclease; IPR051673: Single-stranded-DNA-specific exonuclease RecJ
InterPro domains
IPR001667: DDH domain; IPR003156: DHHA1 domain; IPR041122: RecJ, OB domain; IPR048918: Single-stranded-DNA-specific exonuclease RecJ, C-terminal domain, deinococcus
Matched classes
Nuclease / DNA-RNA repair enzyme [exonuclease, nuclease, recj]
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Reviewed
Translation / ribosomal protein
Organism
Escherichia coli (strain K12)
UniProt ID
P0A7R5
Related PDBs
3d3b
InterPro family
IPR001848: Small ribosomal subunit protein uS10
InterPro domains
IPR027486: Small ribosomal subunit protein uS10 domain
Matched classes
Translation / ribosomal protein [ribosomal]
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Reviewed
Viral replication / viral nucleic-acid-related protein
Organism
Severe acute respiratory syndrome coronavirus 2
UniProt ID
P0DTC2
Related PDBs
8p9y
InterPro family
IPR042578: Spike glycoprotein, betacoronavirus
InterPro domains
IPR002552: Spike glycoprotein S2, coronavirus; IPR018548: Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirus; IPR032500: Spike glycoprotein S1, N-terminal domain, betacoronavirus-like; IPR043607: Coronavirus spike glycoprotein S1, C-terminal; IPR044341: Spike (S) protein S1 subunit, N-terminal domain, SARS-CoV-like; IPR044366: Spike (S) protein S1 subunit, receptor-binding domain, SARS-CoV-2; IPR044873: Spike glycoprotein S2, coronavirus, heptad repeat 1; IPR044874: Spike glycoprotein S2, coronavirus, heptad repeat 2
Matched classes
Viral replication / viral nucleic-acid-related protein [betacoronavirus, coronavirus, spike glycoprotein]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
O75533
Related PDBs
3lqv,5zya,6en4,7b0i,7b91,7b92,7b9c,7evo,7opi,7onb,7omf,8hk1
InterPro family
IPR038737: Splicing factor 3B subunit 1-like
InterPro domains
IPR015016: Splicing factor 3B subunit 1; IPR054573: Phosphatase PP2A regulatory subunit A/Splicing factor 3B subunit 1-like, HEAT repeat
Matched classes
RNA-binding / RNA metabolism protein [splicing factor]
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Reviewed
RNA-binding / RNA metabolism protein
Organism
Homo sapiens
UniProt ID
Q9Y3B4
Related PDBs
3lqv
InterPro family
—
InterPro domains
IPR000504: RNA recognition motif domain; IPR034150: SF3B6, RNA recognition motif
Matched classes
RNA-binding / RNA metabolism protein [rna-binding, sf3b] || DNA/RNA modification or nucleotide metabolism enzyme [nucleotide]
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